Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M26 Chr17q21-25_UniqueNum	BreastC_M26 Chr17q21-25_pVal	BreastC_M26 Chr17q21-25_Unique	ColonC_M2 Chr17q11-12,21-25_UniqueNum	ColonC_M2 Chr17q11-12,21-25_pVal	ColonC_M2 Chr17q11-12,21-25_Unique
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP	13	ANKRD40|CASKIN2|COX11|LRRC59|NME1|PHB|RSAD1|SLC35B1|SNF8|SPAG9|SPOP|UBE2Z|UTP18	3.66273629089e-10	7	7.32547258177e-10	ITGA3|KAT7|LUC7L3|PCTP|PDK2|SPATA20|XYLT2	25	9.47364177795e-23	AARSD1|ACLY|BECN1|CBX1|CDC27|COA3|G6PC3|GIPR|GPATCH8|KPNB1|KRT10|MLX|NBR1|NKIRAS2|NMT1|NPEPPS|NSF|PNPO|PSME3|RETREG3|SMARCE1|SNX11|STAT5B|TMUB2|ZNF652
BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	13	COIL|CSNK1D|EIF4A3|HGS|LRRC59|NME1|NOL11|PHB|PRKAR1A|SAP30BP|SMG8|UTP18|WDR45B	3.57312588522e-07	0	7.1462517689e-07		13	1.54011609537e-16	ACACA|CANT1|CASC3|CDC6|KPNB1|MED1|MMD|NLE1|NPEPPS|NSF|PFN2|PSMD11|PSME3
CAIRO_HEPATOBLASTOMA_CLASSES_UP	17	CCDC47|COIL|EIF4A3|GPS1|LRRC59|MRPL12|MRPS7|NME1|NOL11|NUP85|PHB|RPS6KB1|SEPT9|SRSF1|SUPT4H1|TEX2|UTP18	0.000131405010413	2	0.000262810017713	AAMP|DDX42	21	3.11338796006e-12	AARSD1|AATF|ACLY|AP2B1|BIRC5|BLMH|CDC6|CDC27|CIAO1|DNAJC7|KPNB1|LIG3|NLE1|RPL23|SPAG5|TMEM97|TOP2A|TUBG1|UTP6|ZNF207|ZNHIT3
CAMPS_COLON_CANCER_COPY_NUMBER_UP	5	ANAPC11|MAFG|PCYT2|PYCR1|SIRT7	4.16328341391e-05	3	6.96305972023e-06	MSI2|NPB|USP32P2	3	7.63026085579e-05	CANT1|EFTUD2|NOTCH1
CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_UP	9	C17ORF62|CSNK1D|GGA3|MIF4GD|PYCR1|RSAD1|SLC38A10|STRADA|TBC1D16	0.000523006014957	6	9.7650440185e-05	BPTF|DDX42|LLGL2|LUC7L3|SLC26A11|TOB1	7	0.000948361589728	C17ORF58|CANT1|CYB561|DHRS13|NLK|SLC9A3R1|SYNGR2
FARMER_BREAST_CANCER_CLUSTER_5	16	DCAF7|DHX40|FTSJ3|MED13|MTMR4|POLG2|PPM1D|PTRH2|RAD51C|RPS6KB1|SMARCD2|SMG8|SUPT4H1|TACO1|TRIM37|TUBD1	3.76328573614e-29	0	5.69089479931e-29		1	1.83567667297e-29	CYB561
GSE5099_UNSTIM_VS_MCSF_TREATED_MONOCYTE_DAY7_DN	8	ASPSCR1|DYNLL2|HGS|MRPL38|PRPSAP1|RHBDF2|SMARCD2|USP36	0.000423703456705	2	0.000186037590288	GAA|MFSD13A	3	0.000661369323121	MYO19|SLC9A3R1|SOCS7
GSE17974_2.5H_VS_72H_IL4_AND_ANTI_IL12_ACT_CD4_TCELL_DN	6	CENPX|INTS2|MTMR4|NUP85|PRPSAP1|RAD51C	0.00070249406166	3	0.000771561258002	B3GNTL1|CAPN12|SFN	5	0.000633426865318	FLOT2|HSD17B8|NSF|PIP4K2B|TMEM97
Human Brain_Lastowska07_49genes (17533364-Table3)	8	ANAPC11|EIF4A3|JMJD6|MRPL58|MRPS7|NME1-NME2|PYCR1|SLC25A10	1.02760439528e-10	2	1.88436669639e-10	ETV4|LUC7L3	4	1.70842094167e-11	BIRC5|BRCA1|TK1|TMEM97
Human Brain_Lastowska07_256genes (17533364-TableS2)	46	ANAPC11|ANKRD40|ARL16|CCDC47|DCAF7|DHX40|DUS1L|EIF4A3|FOXK2|FTSJ3|GPS1|INTS2|JMJD6|LRRC59|MED13|MKS1|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|NAT9|NDUFAF8|NME1-NME2|NOL11|NUP85|PHB|POLG2|PPM1D|PSMC5|PTRH2|PYCR1|RAD51C|RPS6KB1|SLC25A10|SLC25A19|SLC38A10|SMG8|SRP68|SRSF1|SUMO2|SUPT4H1|TACO1|TSEN54|TUBD1|UTP18	1.65900936763e-71	14	1.57821943405e-72	ABCC3|AKAP1|ARMC7|BAIAP2|BPTF|CEP95|ETV4|LUC7L3|MSI2|RPL38|SEC14L1|SGSH|SMURF2|UBE2O	19	3.16019679185e-71	BIRC5|BRCA1|CCL15|CDC6|FLOT2|GOSR1|GOSR2|HSD17B1|KPNB1|MRPL10|RNF135|STAT3|SYNRG|TK1|TMEM97|TNFAIP1|TOP2A|UTP6|WIPF2
Human Breast_Desmedt08_28genes_ERBB2_Module (18698033-tableS1-ERBB2)	1	PHB	0.000222308921048	3	0.0004441849761	CDK18|ITGA3|SPATA20	6	4.32865996786e-07	CASC3|CUEDC1|ERBB2|LASP1|PSMD3|WIPF2
Human Breast_Horlings10_271genes (20068109-SuppTable3)	28	AMZ2|CASKIN2|COG1|EXOC7|GGA3|GRB2|JMJD6|KCTD2|METTL23|MRPL38|MRPL58|MRPS7|NAT9|NOL11|NT5C|PGS1|PRKAR1A|PRPSAP1|PSMD12|RAD51C|SAP30BP|SEPT9|SLC25A19|SRP68|SUMO2|TMEM104|TSEN54|USP36	1.38209362954e-21	9	2.6305762382e-29	ACOX1|BPTF|FDXR|GALK1|GNA13|LLGL2|RPL38|SEC14L1|WIPI1	6	2.76418723278e-21	BIRC5|SLC9A3R1|SLC39A11|SYNGR2|TK1|TMC6
Human Breast_Orsetti04_39genes (15374954-Table1)	8	COX11|GRB2|PRKAR1A|RAD51C|RPS6KB1|SMARCD2|SRP68|TOM1L1	9.34313089864e-14	2	1.86850136341e-13	GAA|LLGL2	5	1.24816318975e-17	BIRC5|ERBB2|GOSR2|LASP1|SYNGR2
Human Breast_Turner10_324genes (20101236-SuppTable7a)	17	DUS1L|EIF4A3|FAM104A|FN3KRP|GPS1|MAFG|MRPL38|MRPL58|NARF|NUP85|PGS1|SAP30BP|SRP68|SUMO2|TBCD|TRIM37|TUBD1	1.47481445665e-13	9	9.74273463464e-16	ACOX1|CLTC|GDPD1|HEATR6|LRRC45|MSI2|SEC14L1|SLC26A11|SMPD3	10	2.93988617866e-13	ACACA|BIRC5|DDX52|MRPL45|PEX12|PSMB3|PSMD3|RMND5B|RPL23|SLC39A11
Human HeadandNeck_Jarvinen06_739genes (16715129-SuppTable2)	20	APPBP2|CENPX|COG1|DUS1L|EXOC7|FAM104A|GGA3|GRB2|HGS|JMJD6|MRPL58|MRPS7|NT5C|NUP85|OXLD1|PCYT2|PPM1D|PRPSAP1|SLC38A10|SPAG9	0.00010071038119	6	7.22838803055e-07	ACOX1|BAIAP2|GAA|KBTBD2|LLGL2|SGSH	6	0.000200697923577	C17ORF80|CANT1|DCXR|ICA1L|NOTCH1|TK1
Human Ovarian_Presneau03_37genes (12629520-Table2)	3	COX11|NME1|PHB	3.67507990603e-05	1	7.35012719823e-05	AKAP1	5	3.26138320219e-10	BECN1|BLMH|CDC6|NMT1|NPEPPS
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_UP	48	ANAPC11|ANKRD40|ARL16|CCDC47|DCAF7|DHX40|DUS1L|EIF4A3|FOXK2|FTSJ3|GPS1|INTS2|JMJD6|LRRC59|MCRIP1|MED13|MKS1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|NAT9|NDUFAF8|NME1|NOL11|NUP85|PHB|POLG2|PPM1D|PSMC5|PTRH2|PYCR1|RAD51C|RPS6KB1|SLC25A10|SLC25A19|SLC38A10|SMG8|SRP68|SRSF1|SUMO2|SUPT4H1|TACO1|TSEN54|TUBD1|UTP18	4.81734825855e-75	14	6.57599609886e-76	ABCC3|AKAP1|ARMC7|BAIAP2|BPTF|CEP95|ETV4|LUC7L3|MSI2|RPL38|SEC14L1|SGSH|SMURF2|UBE2O	19	8.97709690722e-75	BIRC5|BRCA1|CDC6|FLOT2|GOSR1|GOSR2|HSD17B1|KPNB1|MRPL10|RNF135|RPL23|STAT3|SYNRG|TK1|TMEM97|TNFAIP1|TOP2A|UTP6|WIPF2
LI_DCP2_BOUND_MRNA	8	CENPX|DUS1L|JMJD6|MRPL12|NARF|PSMC5|SAP30BP|TACO1	1.59030269504e-05	0	1.45697407064e-05		1	1.72363131944e-05	DCXR
MODULE_325	4	APPBP2|COX11|SPOP|UBE2Z	0.00041335609196	1	0.000559183484865	PDK2	2	0.000267528699055	PCGF2|PIP4K2B
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_12	1	ASPSCR1	0.000165190212379	2	0.000330380268538	CLTC|ETV4	6	1.5622054497e-10	BRCA1|ERBB2|LASP1|MLLT6|NF1|SUZ12
NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON	93	AMZ2|ANKRD40|APPBP2|ARL16|ASPSCR1|BCAS3|C17ORF62|CASKIN2|CCDC47|CCDC137|CDC42EP4|CENPX|COG1|COIL|COX11|CSNK1D|DHX40|DUS1L|EXOC7|FAM104A|FN3KRP|FOXK2|FTSJ3|GGA3|GPS1|GRB2|HELZ|HGS|INTS2|KCTD2|LRRC59|MED13|MIF4GD|MKS1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MTMR4|NARF|NAT9|NDUFAF8|NME1|NME1-NME2|NOL11|NT5C|NUP85|OGFOD3|OXLD1|PGS1|PHB|POLG2|PPM1D|PRKAR1A|PSMC5|PSMD12|PTRH2|RAD51C|RFNG|RPS6KB1|RPTOR|RSAD1|SAP30BP|SLC25A10|SLC25A19|SLC35B1|SLC38A10|SMARCD2|SMG8|SNF8|SPAG9|SPOP|SRP68|STRADA|STXBP4|SUMO2|SUPT4H1|TACO1|TBCD|TEPSIN|TEX2|TLK2|TMEM104|TOM1L1|TRIM37|TSEN54|TUBD1|UBE2Z|UNK|USP36|UTP18|WDR45B	1.46338223287e-124	49	1.37687614857e-205	ABCC3|ACOX1|ARMC7|B3GNTL1|BAIAP2|BPTF|C17ORF67|CALCOCO2|CDR2L|CEP95|CEP131|CHMP6|CLTC|DDX5|DDX42|DGKE|EVPL|FAAP100|FBF1|FDXR|FN3K|GALK1|GDPD1|GNA13|HEATR6|ITGA3|KAT7|LLGL2|LRRC45|LUC7L3|MAP3K3|METTL2A|PCTP|PDK2|RAB40B|RAC3|RECQL5|RPL38|SKA2|SMURF2|SPATA20|TEX14|TOB1|TRIM47|TRIM65|USP32|VMP1|WIPI1|XYLT2	21	2.92676446574e-124	AFMID|BIRC5|C17ORF58|C17ORF80|CANT1|CBX1|DCXR|FASN|MMD|NFE2L1|PNPO|PRR15L|RNFT1|SLC9A3R1|SLC39A11|SNX11|SYNGR2|TK1|TMC6|TMC8|ZNF652
ZF5_01	6	PPM1D|SPAG9|SUMO2|TLK2|UBALD2|UTP18	5.11479227945e-05	6	3.94825352668e-05	HPCA|ITGA3|MAP3K3|SEC14L1|SMPD3|XYLT2	8	6.28133103223e-05	C17ORF58|KLC2|KPNB1|MLLT6|NSF|PHF12|RAPGEFL1|STAT5B
cellular protein catabolic process [GoID:GO:0044257; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	14	ANAPC11|CCDC47|CSNK1D|KCTD2|NPLOC4|PSMC5|PSMD12|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP36	0.000545065300967	5	0.000970692799463	CLTC|ERCC8|SMURF2|USP6|USP32	12	0.00011943780247	AP2B1|CDC27|MVB12B|PSMB3|PSMD3|PSMD11|PSME3|RMND5B|RPL23|SDF2|TNFAIP1|VPS25
chr17q	3	POLG2|RAD51C|TRIM37	6.91739063159e-06	1	1.26416536862e-05	MAP3K3	2	1.19312757699e-06	CARD14|MMD
chr17q21	17	ANKRD40|APPBP2|LRRC59|MKS1|MRPL27|NME1|NME1-NME2|PHB|RSAD1|SLC35B1|SNF8|SPAG9|SPOP|SRSF1|SUPT4H1|UBE2Z|UTP18	1.46148331293e-22	14	2.92296662587e-22	ABCC3|AKAP1|CALCOCO2|DDX5|ETV4|ITGA3|KAT7|LUC7L3|PCTP|PDK2|SPATA20|TOB1|TOB1-AS1|XYLT2	62	6.53265532833e-79	AARSD1|ACACA|ACLY|ATXN7L3|BECN1|BRCA1|CBX1|CCDC43|CDC6|COA3|DBF4B|DDX52|DHX8|EFTUD2|FBXL20|FLJ45513|G6PC3|GGNBP2|GHDC|GOSR2|GPATCH8|JUP|KANSL1|KPNB1|KRT10|LINC02210|MLLT6|MLX|MRPL10|MRPL45|MYO19|NBR1|NBR2|NFE2L1|NKIRAS2|NMT1|NSF|NT5C3B|PEX12|PIGW|PIP4K2B|PNPO|PRR15L|PSMD3|RAPGEFL1|RETREG3|RUNDC1|SLC39A11|SMARCE1|SNX11|SOCS7|STAT3|SUZ12|TMEM99|TMEM101|TMUB2|TOP2A|TUBG1|VPS25|WIPF2|ZNF652|ZNHIT3
chr17q22	7	COIL|COX11|DHX40|MED13|MRPS23|MTMR4|STXBP4	5.14722036491e-09	3	3.07905025566e-13	DGKE|SMURF2|TEX14	1	1.02941328248e-08	TNFAIP1
chr17q23	21	BCAS3|CCDC47|DCAF7|DYNLL2|FTSJ3|INTS2|MRPL38|MRPS7|PPM1D|PRKAR1A|PSMC5|PTRH2|RPS6KB1|SMARCD2|SMG8|STRADA|TACO1|TEX2|TLK2|TUBD1|VEZF1	1.59486641786e-27	9	2.24607929396e-39	DDX42|GALK1|GDPD1|METTL2A|MSI2|SKA2|SNORD104|USP32|VMP1	4	3.18973283571e-27	CUEDC1|CYB561|RNFT1|TK1
chr17q24	9	AMZ2|AMZ2P1|CDC42EP4|COG1|GRB2|HELZ|NOL11|PRPSAP1|PSMD12	6.29606088919e-12	7	6.82849077744e-22	ACOX1|BPTF|CEP95|FDXR|GNA13|LLGL2|WIPI1	2	1.25921217777e-11	C17ORF58|SLC9A3R1
chr17q25	55	ANAPC11|ARL16|ASPSCR1|C17ORF62|CASKIN2|CCDC137|CENPX|CSNK1D|DUS1L|EIF4A3|EXOC7|FAM104A|FN3KRP|FOXK2|GGA3|GPS1|HGS|JMJD6|KCTD2|MAFG|MAFG-AS1|METTL23|MIF4GD|MRPL12|MRPL58|NARF|NAT9|NDUFAF8|NT5C|NUP85|OGFOD3|OXLD1|PCYT2|PGS1|PYCR1|RFNG|RHBDF2|RPTOR|SAP30BP|SEPT9|SIRT7|SLC25A10|SLC25A19|SLC38A10|SRP68|SUMO2|TBC1D16|TBCD|TEPSIN|TMEM104|TSEN54|UBALD2|UNK|USP36|WDR45B	2.14784858578e-74	27	2.15304984991e-120	ARMC7|B3GNTL1|BAIAP2|CBX8|CDR2L|CEP131|CHMP6|EVPL|FAAP100|FBF1|FN3K|GAA|LRRC45|NPB|QRICH2|RAB40B|RAC3|RECQL5|RPL38|SCARNA16|SEC14L1|SGSH|SLC26A11|SMIM5|TRIM47|TRIM65|UBE2O	10	4.29569717156e-74	AFMID|BIRC5|C17ORF80|CANT1|CARD14|DCXR|FASN|SYNGR2|TMC6|TMC8
intracellular ribonucleoprotein complex [GoID:GO:0030529; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	16	DHX40|EIF4A3|FTSJ3|JMJD6|MCRIP1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|RPTOR|SRP68|SRSF1|UNK|UTP18	0.000161277220258	6	0.000307257864757	AAMP|DDX5|LUC7L3|MSI2|RPL38|ZRSR1	14	1.52965757598e-05	BRCA1|CASC3|DHX8|EFTUD2|MRPL10|MRPL45|NLE1|NSRP1|NUFIP2|RPL23|TEFM|TOP2A|UTP6|ZMAT5
mitochondrial translation [GoID:GO:0032543; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	7	MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|POLG2	0.000469329800182	0	0.000929430819954		4	9.22878041049e-06	COA3|ERAL1|MRPL10|MRPL45
mitochondrial translational elongation [GoID:GO:0070125; evidenceTypes:IBA|TAS]	6	MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23	0.00037809152528	0	0.000737200785195		3	1.89822653659e-05	ERAL1|MRPL10|MRPL45
mitochondrial translational termination [GoID:GO:0070126; evidenceTypes:IBA|TAS]	6	MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23	0.000429500627051	0	0.000836072524867		3	2.2928729235e-05	ERAL1|MRPL10|MRPL45
modification-dependent macromolecule catabolic process [GoID:GO:0043632; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	14	ANAPC11|CCDC47|CSNK1D|KCTD2|NPLOC4|PSMC5|PSMD12|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP36	0.000161411593383	4	0.000282186370528	ERCC8|SMURF2|USP6|USP32	10	4.06368162379e-05	CDC27|MVB12B|PSMB3|PSMD3|PSMD11|PSME3|RMND5B|RPL23|TNFAIP1|VPS25
modification-dependent protein catabolic process [GoID:GO:0019941; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	14	ANAPC11|CCDC47|CSNK1D|KCTD2|NPLOC4|PSMC5|PSMD12|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP36	0.000130932344473	4	0.000230681689245	ERCC8|SMURF2|USP6|USP32	10	3.11829997011e-05	CDC27|MVB12B|PSMB3|PSMD3|PSMD11|PSME3|RMND5B|RPL23|TNFAIP1|VPS25
protein catabolic process [GoID:GO:0030163; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	17	ANAPC11|CCDC47|CSNK1D|GGA3|HGS|KCTD2|NPLOC4|PHB|PSMC5|PSMD12|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP36	0.000177155210932	6	0.000272839665418	CLTC|ERCC8|SGSH|SMURF2|USP6|USP32	13	8.14707564459e-05	AP2B1|CDC27|MVB12B|NSF|PSMB3|PSMD3|PSMD11|PSME3|RMND5B|RPL23|SDF2|TNFAIP1|VPS25
ribonucleoprotein complex [GoID:GO:1990904; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	16	DHX40|EIF4A3|FTSJ3|JMJD6|MCRIP1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|RPTOR|SRP68|SRSF1|UNK|UTP18	0.000170573624443	6	0.000324605976328	AAMP|DDX5|LUC7L3|MSI2|RPL38|ZRSR1	14	1.65412725577e-05	BRCA1|CASC3|DHX8|EFTUD2|MRPL10|MRPL45|NLE1|NSRP1|NUFIP2|RPL23|TEFM|TOP2A|UTP6|ZMAT5
translational elongation [GoID:GO:0006414; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	7	EIF4A3|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23	0.000491547007267	0	0.000929430819954		3	5.36631945799e-05	ERAL1|MRPL10|MRPL45
ubiquitin-dependent protein catabolic process [GoID:GO:0006511; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	14	ANAPC11|CCDC47|CSNK1D|KCTD2|NPLOC4|PSMC5|PSMD12|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP36	0.000116309786736	4	0.000205784179493	ERCC8|SMURF2|USP6|USP32	10	2.68353939798e-05	CDC27|MVB12B|PSMB3|PSMD3|PSMD11|PSME3|RMND5B|RPL23|TNFAIP1|VPS25
